Review Article Open access Peer reviewed

Exploration of Soil Microbiomes as a Source of Novel Antimicrobial Compounds for Combating Drug-Resistant Pathogens

Authors

Tijani Abiola Tajudeen1https://orcid.org/0009-0007-0217-5401, Olaitan Lateefat Salam2, Idowu Afeez Temitope3, Abdulhakeem Idris Abdulhakeem4https://orcid.org/0009-0007-0715-7472, Ishola Jonathan Adekunle5, Musa Ojeba Innocent6https://orcid.org/0000-0002-8843-6911, Mustapha Abdulsalam6https://orcid.org/0000-0001-7969-0822
  1. Department of Soil Science, Federal University of Technology, Minna, Nigeria
  2. Department of Chemistry and Molecular Biology, University of Gothenburg, Sweden
  3. Department of Medicinal Research, Kaohsiung Medical University Hospital, Taiwan
  4. Department of Biodiversity and Bioresources, Al-Farabi Kazakh National University, Kazakhstan
  5. Department of Public Health, Obafemi Awolowo University, Ile-Ife, Nigeria
  6. Department of Microbiology, Skyline University, Nigeria
Received
Published
DOI https://doi.org/10.55006/biolsciences.2025.5305 How to Cite Biological Sciences, Vol. 5 No. 3 (2025), 1005-1017

Abstract

The soil microbiome represents a valuable and largely untapped resource for drug discovery, containing a diverse array of microorganisms capable of producing bioactive compounds with significant therapeutic potential. This study examines the role of soil-derived microorganisms in the development of novel antimicrobial, anticancer, and other bioactive agents, highlighting the advancements made through high-throughput sequencing, metagenomics, and omics technologies. These approaches have significantly enhanced our ability to identify and characterize bioactive compounds within complex soil ecosystems. However, challenges such as culturing unculturable microorganisms, ensuring compound stability, and translating findings into clinical applications remain significant barriers. The study also explores the integration of computational tools, particularly machine learning and artificial intelligence, which have shown promise in accelerating the identification and optimization of bioactive compounds. Moreso, ethical considerations surrounding soil bioprospecting, including environmental impact and sustainable practices, are discussed as critical factors in ensuring responsible microbial resource exploration. With antimicrobial resistance becoming an increasingly urgent global health crisis, the potential of soil microbiomes as a source of novel therapeutics is more crucial than ever. However, the study emphasizes the need for continued advancements in metagenomics, synthetic biology, and drug delivery systems. It also advocates for greater interdisciplinary collaboration to overcome existing challenges and unlock the full potential of soil microbiomes for drug discovery.

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